domains / families / science / bio-phasing-imputation-imputation-qc

bio-phasing-imputation-imputation-qc

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Quality control of phasing and imputation results by filtering by INFO scores, assessing accuracy, and preparing imputed data for downstream analysis.

When to use

• filtering low-quality imputed variants
• validating imputation accuracy before GWAS
• extracting INFO scores
• filtering by INFO score
• assessing imputation quality
• checking concordance with typed variants

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