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ssgsea-immune-infiltration-analysis

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Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score visualizations. NOT for single-cell RNA-seq, absolute cell proportion estimation, or clinical decision making.

When to use

• Estimate relative immune infiltration from a bulk RNA-seq expression matrix.
• Compare immune enrichment scores between one case group and one control group.
• Generate structured result tables plus optional PDF visualizations for downstream review.

When not to use

• Single-cell RNA-seq or spatial transcriptomics.
• Absolute immune cell proportion estimation or deconvolution.
• Clinical diagnosis, treatment recommendation, or any other medical decision making.

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