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bio-hi-c-analysis-loop-calling

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Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and enhancer-promoter contacts. Use when detecting chromatin loops from Hi-C data.

When to use

• Detect chromatin loops from Hi-C data
• Detect point enrichments in contact matrices
• Identify CTCF-mediated loops
• Identify enhancer-promoter contacts
• Call dots with cooltools
• Call loops with chromosight
• Call loops with HiCExplorer
• Compute aggregate peak analysis

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