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bio-workflows-hic-pipeline

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End-to-end Hi-C analysis workflow from contact pairs to compartments, TADs, and loops. Covers cooler matrices, cooltools analysis, and visualization.

When to use

• processing Hi-C data to compartments and TADs
• Hi-C chromosome conformation capture analysis
• cooler matrices
• cooltools analysis
• visualization
• alignment and pair processing
• matrix generation
• normalization

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