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bio-phasing-imputation-haplotype-phasing

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Phase genotypes into haplotypes using Beagle or SHAPEIT to resolve which alleles are inherited together on each chromosome. Use when preparing VCF files for imputation, HLA typing, or population genetic analyses requiring phased haplotypes.

When to use

• Phase genotypes into haplotypes
• Prepare VCF files for imputation
• HLA typing
• Population genetic analyses requiring phased haplotypes
• Resolve which alleles are inherited together

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