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bio-workflows-gwas-pipeline

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End-to-end GWAS workflow from VCF to association results. Covers PLINK QC, population structure correction, and association testing for case-control or quantitative traits.

When to use

• running genome-wide association studies
• PLINK QC
• population structure correction
• association testing for case-control traits
• association testing for quantitative traits
• LD pruning for PCA
• Manhattan plot generation
• QQ plot generation

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