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bio-genome-intervals-gtf-gff-handling

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Parse, query, and convert GTF and GFF3 annotation files. Extract gene, transcript, and exon coordinates using gffread, gtfparse, and gffutils.

When to use

• extracting specific features from gene annotations
• converting between annotation formats
• parsing GTF with gtfparse
• parsing GFF with gffutils
• extracting sequences with gffread
• filtering features with gffread
• extracting regions with bedtools

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