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bio-pathway-gsea

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Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. Use when analyzing ranked gene lists to find coordinated expression changes in gene sets without arbitrary significance cutoffs. Detects subtle but coordinated expression changes.

When to use

• analyzing ranked gene lists
• detecting coordinated expression changes
• GSEA with GO
• GSEA with KEGG
• GSEA with custom gene sets
• GSEA with MSigDB gene sets
• converting gene IDs for GSEA
• interpreting NES

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