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bionemo-codonfm-finetune

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Fine-tune public CodonFM Encodon checkpoints on labeled coding-sequence or coding-variant data using LoRA, head-only, or full fine-tuning. Use when a user explicitly asks to fine-tune CodonFM or Encodon for regression or classification. Support generic public-v1 Encodon workflows only; reject Decodon, MissenseDataset, missense_synom_agg, and generation workflows.

When to use

• Fine-tune public CodonFM Encodon checkpoints
• Labeled coding-sequence data
• Labeled coding-variant data
• LoRA fine-tuning
• Head-only fine-tuning
• Full fine-tuning
• Regression tasks
• Classification tasks

When not to use

• Decodon workflows
• MissenseDataset
• missense_synom_agg
• Generation workflows

Skill page

Source