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bio-workflows-genome-assembly-pipeline

separate

End-to-end genome assembly workflow from reads to polished assembly with QC. Supports short reads (SPAdes), long reads (Flye), and hybrid approaches.

When to use

• assembling genomes from raw reads
• short-read assembly with SPAdes
• long-read assembly with Flye
• hybrid assembly approaches
• assembly polishing
• quality assessment with QUAST and BUSCO

Skill page

Source