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bio-copy-number-gatk-cnv

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Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.

When to use

• somatic CNV detection
• germline CNV detection
• WGS data analysis
• WES data analysis
• GATK best practices workflow
• integrating CNV calling with other GATK variant pipelines

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