domains / families / science / cytometry-qc

cytometry-qc

separate

Quality control for flow, spectral, and mass cytometry - time-based anomaly cleaning (flowAI, flowCut, PeacoQC, flowClean), margin/boundary event removal, signal-drift detection, dead-cell exclusion, CyTOF Gaussian/DNA/event-length checks, instrument calibration/standardization (MESF, CS&T, peak-2), and batch-level outlier flagging. Use when assessing acquisition quality, choosing a cleaning tool, ordering QC relative to compensation, deciding margin removal before density-based steps, or flagging problematic samples before clustering or differential analysis.

When to use

• time-based anomaly cleaning
• margin/boundary event removal
• signal-drift detection
• dead-cell exclusion
• CyTOF Gaussian/DNA/event-length checks
• instrument calibration/standardization
• batch-level outlier flagging
• assessing acquisition quality

When not to use

• clustering
• differential analysis

Skill page

Source