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fastq-analysis

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Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.

When to use

• SRA data acquisition
• FASTQ quality control
• RNA-seq alignment
• Gene quantification
• Single-cell kallisto/bustools pipelines
• Bulk RNA-seq workflows
• Single-cell RNA-seq workflows
• Parallel SRA download

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