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bio-epidemiological-genomics-transmission-inference

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Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.

When to use

• investigating outbreak transmission chains
• identifying superspreaders
• reconstructing transmission networks
• identifying transmission pairs
• estimating R0 and generation time
• identifying unsampled cases

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