domains / families / science / dnanexus-integration

dnanexus-integration

combined

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution. Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.

When to use

• Creating, building, or modifying DNAnexus apps/applets
• Uploading, downloading, searching, or organizing files and records
• Running analyses, monitoring jobs, creating workflows
• Writing scripts using dxpy to interact with the platform
• Setting up dxapp.json, managing dependencies, using Docker
• Processing FASTQ, BAM, VCF, or other bioinformatics files
• Managing projects, permissions, or platform resources
• `dx` CLI and `dxpy` automation

Skill page

Conflict

The K-Dense-AI copy is a distinct, high-fidelity operational procedure that includes specific version pinning (dxpy 0.415.0), a strict 'Operating Contract' for security and cost control, and specific CLI-based workflows (e.g., `dx upload` with compression flags). The other three copies (Vibe-Skills, aipoch, OpenClaw) are nearly identical to each other, providing a high-level overview and Python SDK examples but lacking the operational safety constraints and specific CLI nuances of the K-Dense version. Because the K-Dense version contains critical operational steps (preflight checks, specific authentication handling, and cost controls) that the others lack, and the others provide a different (more SDK-focused) entry point, crowning one would hide the alternative approach. The combined instruction merges the operational safety of K-Dense with the SDK examples of the others.