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bio-microbiome-diversity-analysis

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Alpha and beta diversity analysis for microbiome data. Calculate within-sample richness, evenness, and between-sample dissimilarity with phyloseq and vegan. Use when comparing community composition across samples or testing for group differences in microbiome structure.

When to use

• comparing community composition across samples
• testing for group differences in microbiome structure
• calculating alpha diversity
• calculating beta diversity
• Faith's Phylogenetic Diversity
• rarefaction curves
• PERMANOVA testing
• NMDS ordination

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