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bio-de-deseq2-basics

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Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold change shrinkage. Use when performing DE analysis with DESeq2.

When to use

• analyzing RNA-seq count data
• creating DESeqDataSet objects
• running the DESeq workflow
• extracting results with log fold change shrinkage
• specifying design formulas
• specifying contrasts
• setting significance thresholds
• accessing DESeq2 results

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