domains / families / science / bulk-deseq2-analysis

bulk-deseq2-analysis

separate

Walk Claude through PyDESeq2-based differential expression, including ID mapping, DE testing, fold-change thresholding, and enrichment visualisation.

When to use

• PyDESeq2-based differential expression
• ID mapping
• DE testing
• fold-change thresholding
• enrichment visualisation
• loading raw featureCounts matrices
• mapping Ensembl IDs to symbols
• running PyDESeq2 via ov.bulk.pyDEG

Skill page

Source