domains / families / science / bio-variant-calling-deepvariant

bio-variant-calling-deepvariant

separate

Deep learning-based variant calling with Google DeepVariant. Provides high accuracy for germline SNPs and indels from Illumina, PacBio, and ONT data. Use when calling variants with DeepVariant deep learning caller.

When to use

• calling variants with DeepVariant
• germline SNP and indel calling
• Illumina WGS and WES variant calling
• PacBio HiFi variant calling
• Oxford Nanopore variant calling
• GPU accelerated variant calling
• joint calling with GLnexus

Skill page

Source