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bio-workflows-cytometry-pipeline

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End-to-end flow cytometry workflow from FCS files to differential analysis. Orchestrates compensation, transformation, gating/clustering, and statistical testing with CATALYST/diffcyt.

When to use

• processing flow or mass cytometry data end-to-end
• compensation
• transformation
• gating/clustering
• statistical testing
• differential abundance analysis
• differential state analysis
• UMAP dimensionality reduction

Skill page

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