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bio-workflows-crispr-screen-pipeline

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End-to-end CRISPR screen analysis from FASTQ to hit genes. Orchestrates guide counting, QC, statistical analysis with MAGeCK, and hit calling with multiple methods.

When to use

• analyzing pooled CRISPR screens
• guide counting
• QC
• statistical analysis with MAGeCK
• hit calling
• visualization
• reporting

Skill page

Source