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bio-genome-assembly-contamination-detection

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Detect contamination and assess genome quality using CheckM, CheckM2, GTDB-Tk, and GUNC for metagenome-assembled genomes and isolate assemblies.

When to use

• checking assemblies for contamination
• assessing genome quality
• taxonomic classification
• chimerism detection
• filtering by quality standards
• removing contamination
• detecting foreign contigs

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