domains / families / science / bio-consensus-sequences

bio-consensus-sequences

separate

Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. Use when creating sample-specific reference sequences or reconstructing haplotypes.

When to use

• Generate consensus FASTA sequences
• Apply VCF variants to a reference
• Create sample-specific reference sequences
• Reconstruct haplotypes
• Mask low-coverage regions
• Generate chain files
• Filter variants before consensus
• Prepare sequences for phylogenetic analysis

Skill page

Source