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bio-workflows-cnv-pipeline

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End-to-end copy number variant detection workflow from BAM files. Covers CNVkit analysis for exome/targeted sequencing with visualization and annotation.

When to use

• detecting copy number alterations from sequencing data
• CNVkit analysis for exome/targeted sequencing
• copy number variant detection workflow
• germline CNV calling
• tumor/normal CNV analysis

Skill page

Source