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bio-clip-seq-clip-preprocessing

separate

Preprocess CLIP-seq data including adapter trimming, UMI extraction, and PCR duplicate removal. Use when preparing raw CLIP, iCLIP, or eCLIP reads for peak calling.

When to use

• adapter trimming
• UMI extraction
• PCR duplicate removal
• preparing raw CLIP reads
• preparing iCLIP reads
• preparing eCLIP reads
• two-pass trimming for eCLIP
• CLIP-seq quality control

When not to use

• peak calling
• aligning reads

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