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bio-clip-seq-clip-peak-calling

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Call protein-RNA binding site peaks from CLIP-seq data using CLIPper, PureCLIP, or Piranha. Use when identifying RBP binding sites from aligned CLIP reads.

When to use

• identifying RBP binding sites
• CLIP-seq peak calling
• PAR-CLIP peak calling
• strand-specific peak calling
• merging replicates
• filtering peaks

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