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cerna-analysis

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Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization in a single output directory. NOT for: differential expression, single-cell analysis, enrichment analysis, or workflows without a key gene list.

When to use

• Building a ceRNA network from one gene list and exporting flat CSV plus PDF outputs
• Comparing supported miRNA source modes such as `combined`, `starbase`, or pairwise overlaps
• Re-running the same local workflow with different lncRNA strictness, layout, or plotting parameters
• Differential expression, single-cell, enrichment, or survival analysis
• Workflows that do not start from a key gene list
• Cases where you want a miRNA-mRNA-only graph without a retained lncRNA ceRNA layer

When not to use

• Differential expression
• Single-cell analysis
• Enrichment analysis
• Survival analysis
• Workflows without a key gene list
• miRNA-mRNA-only graph without lncRNA layer

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