domains / families / science / cellprofiler

cellprofiler

separate

Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.

When to use

• nuclear segmentation
• cell counts
• per-object fluorescence measurements
• image/channel manifests
• headless batch execution
• segmentation overlays
• measurement QC
• 2D fluorescence assays

When not to use

• volumetric segmentation
• multichannel cell painting
• tissue-specific models

Skill page

Source