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bulk-combat-correction

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Use omicverse's pyComBat wrapper to remove batch effects from merged bulk RNA-seq or microarray cohorts, export corrected matrices, and benchmark pre/post correction visualisations.

When to use

• remove batch effects from merged bulk RNA-seq cohorts
• remove batch effects from microarray cohorts
• export corrected matrices
• benchmark pre/post correction visualisations
• harmonise multiple bulk expression matrices
• run ComBat batch correction
• plot PCA embeddings before and after batch correction

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