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sashimi-plots

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Creates sashimi-style plots showing RNA-seq read coverage and splice junction counts using ggsashimi (general-purpose, condition-grouped overlays), rmats2sashimiplot (rMATS-output-aware), MAJIQ-VOILA (LSV posteriors interactive HTML), leafviz (leafcutter clusters Shiny), Jutils (tool-agnostic heatmaps and sashimi for rMATS/leafcutter/MntJULiP/MAJIQ output), or pyGenomeTracks (multi-track publication figures). Tool choice depends on the upstream differential-splicing tool's output format and the publication vs interactive use case. Use when visualizing specific splicing events, validating differential splicing calls, or producing publication-quality figures.

When to use

• visualizing specific splicing events
• validating differential splicing calls
• producing publication-quality figures
• interactive LSV browsing
• cluster-level interactive browsing
• multi-track publication figures
• tool-agnostic batch heatmaps
• quick ad-hoc inspection

When not to use

• MISO sashimi (unmaintained)
• static figures for MAJIQ-VOILA
• non-splicing-specific tracks for pyGenomeTracks

Skill page

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