domains / families / science / automated-qc-reports

automated-qc-reports

separate

Aggregates per-tool QC metrics (FastQC, fastp, alignment, quantification, variant calling, single-cell) into one interactive MultiQC report, and guides module scoping, sample-name resolution, large-cohort behavior, and turning the report into an actual QC gate. Use when summarizing QC across many samples, building a shareable quality report, or wiring automated QC into a pipeline.

When to use

• summarizing QC across many samples
• building a shareable quality report
• wiring automated QC into a pipeline
• aggregating per-tool QC metrics
• module scoping
• sample-name resolution
• large-cohort behavior
• turning the report into an actual QC gate

When not to use

• measuring QC metrics
• pass/fail gating
• stopping the pipeline on bad QC

Skill page

Source