domains / families / science / bio-data-visualization-specialized-omics-plots

bio-data-visualization-specialized-omics-plots

separate

Reusable plotting functions for common omics visualizations using custom ggplot2 and matplotlib implementations. Use when creating volcano, MA, or enrichment plots.

When to use

• Volcano plots (any DE result)
• MA plots (any log-fold-change data)
• PCA plots (any high-dimensional data)
• Enrichment dotplots (manual, not enrichplot)
• Expression boxplots with statistics
• Survival curves

When not to use

• DESeq2/edgeR built-in functions
• enrichplot-specific functions

Skill page

Source