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bio-workflows-atacseq-pipeline

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End-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers alignment, peak calling with MACS3, QC metrics, and optional TOBIAS footprinting.

When to use

• running end-to-end ATAC-seq analysis
• alignment
• peak calling with MACS3
• QC metrics
• optional TOBIAS footprinting
• differential accessibility

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