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nucleosome-positioning

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Map nucleosome center positions, occupancy, and fuzziness from ATAC-seq fragment-size patterns using NucleoATAC, ATACseqQC, DANPOS3, or scprinter. Use when characterizing nucleosome organization at promoters and enhancers, calling +1/-1 nucleosomes flanking NFRs, generating V-plots for chromatin structure visualization, or comparing nucleosome positioning between conditions.

When to use

• characterizing nucleosome organization at promoters and enhancers
• calling +1/-1 nucleosomes flanking NFRs
• generating V-plots for chromatin structure visualization
• comparing nucleosome positioning between conditions
• mapping nucleosome center positions
• mapping nucleosome occupancy
• mapping nucleosome fuzziness

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