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bio-atac-seq-atac-peak-calling

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Call accessible chromatin regions from ATAC-seq data using MACS3 with ATAC-specific parameters. Use when identifying open chromatin regions from aligned ATAC-seq BAM files, different from ChIP-seq peak calling.

When to use

• Identify open chromatin regions
• ATAC-seq peak calling
• Call peaks on NFR only
• Batch processing of ATAC-seq samples
• IDR for Replicate Consistency
• Merge Replicates
• Convert to BigWig

When not to use

• ChIP-seq peak calling

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