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bio-metagenomics-amr-detection

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Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when characterizing resistance profiles in clinical isolates, surveillance samples, or metagenomic data.

When to use

• characterizing resistance profiles in clinical isolates
• screening surveillance samples
• screening metagenomic data
• identifying antimicrobial resistance determinants in bacterial genomes
• searching against curated resistance gene databases
• metagenome AMR profiling
• quick screening with ABRicate
• detailed resistance mechanism annotation with CARD/RGI

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