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nextflow-development

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Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

When to use

• analyzing RNA-seq data
• analyzing WGS/WES data
• analyzing ATAC-seq data
• local FASTQ analysis
• public datasets from GEO/SRA
• variant calling
• gene expression
• differential expression

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