domains / families / data / oncoprint-mutation-matrices

oncoprint-mutation-matrices

separate

Build OncoPrint and co-mutation matrix plots from somatic-variant cohorts using ComplexHeatmap, maftools, and comut.py with alteration-type stacking, sample ordering by mutational burden, mutual-exclusivity overlays, and clinical annotation tracks. Use when visualizing per-sample mutation patterns across recurrent driver genes, comparing alteration classes, or identifying mutually-exclusive / co-occurring driver pairs.

When to use

• visualizing per-sample mutation patterns across recurrent driver genes
• comparing alteration classes
• identifying mutually-exclusive / co-occurring driver pairs
• rendering gene-by-sample matrices with stacked alteration encoding
• sorting samples by mutational burden
• overlaying co-mutation and mutual-exclusivity annotations
• adding clinical annotation tracks

Skill page

Source