domains / families / data / upset-plots

upset-plots

separate

Build UpSet plots to visualize set intersections beyond 4 sets (where Venn fails) using ComplexUpset (modern, ggplot2-grammar) or the unmaintained UpSetR, with explicit cardinality vs degree sorting, attribute panels, and query highlighting. Use when comparing overlap across many gene sets, peak sets, variant lists, or any set membership matrix where Venn diagrams become illegible.

When to use

• visualize set intersections beyond 4 sets
• comparing overlap across many gene sets
• comparing overlap across peak sets
• comparing overlap across variant lists
• set membership matrix visualization
• cardinality vs degree sorting
• attribute panels
• query highlighting

When not to use

• Venn diagrams for 4 or fewer sets

Skill page

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