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uniprot-access

separate

Query UniProt's REST API (post-2022 endpoint at rest.uniprot.org) for protein sequences, annotations, GO terms, cross-references, ID mappings, and proteomes. Use when fetching UniProtKB entries, navigating the JSON schema, choosing between UniProtKB/UniRef/UniParc/Proteomes resources, deciding stream vs search endpoint for batch retrieval, running ID-mapping jobs with the async pattern, handling isoform suffixes, or filtering reviewed Swiss-Prot vs auto-annotated TrEMBL. Encodes the legacy URL migration (2022), the new JSON schema layout, and bulk-pull patterns.

When to use

• fetching UniProtKB entries
• navigating the JSON schema
• choosing between UniProtKB/UniRef/UniParc/Proteomes resources
• deciding stream vs search endpoint for batch retrieval
• running ID-mapping jobs with the async pattern
• handling isoform suffixes
• filtering reviewed Swiss-Prot vs auto-annotated TrEMBL
• bulk-pull patterns

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