domains / families / data / batch-effect-correction

batch-effect-correction

separate

Use when correcting batch effects in merged bulk expression matrices with sample-level batch metadata while preserving biological group structure and generating before-and-after QC plots. NOT for: single-cell integration, raw FASTQ processing, differential expression without batch labels, or datasets without biological groups.

When to use

• correcting batch effects in merged bulk expression matrices
• preserving biological group structure
• generating before-and-after QC plots

When not to use

• single-cell integration
• raw FASTQ processing
• differential expression without batch labels
• datasets without biological groups

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